After spending my day troubleshooting the issue, I decided to follow the idea I found here. I backed up my configuration files and then reinstalled my RPi operating system with the 32 bit instead of 64 bit (OS lite for both). I currently don’t have any issues, but I also didn’t have any issues before.
One thing that I found particularly annoying was I needed to remove the setup in my printer.cfg that allowed me to do resonance testing for input shaping. In hindsight, it is because I never split the cpu like is required in the resonance testing setup, but it took a while for me to figure out I needed to cut it out of the code.
TLDR: completely re-setup the system and maybe your issues will go away (but maybe some unexpected problems might pop up if you re-do it with no changes).