Update Manager won't update system

I have klipper running on a Inovato Quadra and I have successfully flashed klipper Firmware onto a Atmega 2560 running a Makerbot Replicator clone.
Everything is working great but I am not able to update the system from the Update Manager on Mainsail. I have updated/upgraded the system via ssh but the update manager is still showing 132 packages can be upgraded. I have also used the update path through KIAUH which works fine but the update manager still states the same. Any help would be appreciated.