And then if you know how to install the Klipper from a different branch (e.g. via Kiauh), you can try this a bit different resonance testing algorithm and see if it produces different results for you:
Compared to the original test, the above graph had 2 changes.
First, I changed the usb c cable, since the results I was getting originally looked like it was possible that the data transfer was messed up.
Secondly, I removed the EPA foam mat, and put the print directly on the shelf.
I saw on another forum post (Input Shaper issues? weirdness - #11 by SuperCow) that someone had a similar looking graph to my most recent, with lots of low frequency amplitude. In this post the solution was to get the linear rails running more smoothly, so that is going to be my next thing to change. I’ll post the results once done.
Update after having a crack at smoothing the rails with knife sharpening stone, and placing back on foam pad.
Slowly seems to be getting there. I do find that double peak interesting though, as well as that small bit of initial amplitude. I guess the rail is still binding somewhat.